🌱 plant-genomics-mcp
32 tools for plant-genomics locus lookup over the Model Context Protocol — 16 single-locus + 12 parallel-batch + 4 cross-source synthesis variants. Free, public sources: Ensembl Plants, Phytozome BioMart, UniProtKB, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, and BAR (Bio-Analytic Resource for Plant Biology).
📦 Install
pipx install plant-genomics-mcp
claude mcp add plant-genomics --scope local -- plant-genomics-mcpOther install paths (Docker, from source)
# GHCR Docker image
docker pull ghcr.io/musharna/plant-genomics-mcp:latest
claude mcp add plant-genomics --scope local -- \
docker run --rm -i ghcr.io/musharna/plant-genomics-mcp:latest
# From source
git clone https://github.com/musharna/plant-genomics-mcp.git
cd plant-genomics-mcp
python -m venv .venv && .venv/bin/pip install -e .
claude mcp add plant-genomics --scope local -- "$(pwd)/.venv/bin/plant-genomics-mcp"🛠️ Tools
32 tools across 11 backends — Ensembl Plants, Phytozome BioMart,
UniProtKB, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB,
ATTED-II, BAR. 16 single-locus + 12 parallel-batch + 4 cross-source
synthesis. All take a TAIR-style locus (e.g. AT1G01010) plus
optional organism= (slug / scientific name / common name / NCBI taxid
— 12-plant curated coverage matrix at the pgmcp://organisms/coverage
MCP resource). All publish JSON outputSchema and EDAM ontology tags.
